BRAKER1 and BRAKER2


BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database


Tomáš Brůna, Katharina J. Hoff, Alexandre Lomsadze, Mario Stanke, Mark Borodovsky
"BRAKER2: Automatic Eukaryotic Genome Annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database"
Submitted
bioRxiv


BRAKER1: Unsupervised RNA-Seq-based genome annotation with GeneMark-ET and AUGUSTUS


Katharina J. Hoff, Simone Lange, Alexandre Lomsadze, Mark Borodovsky and Mario Stanke
"BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS"
Bioinformatics, 2015, Nov 11
PubMed | Article


Both BRAKER1 and BRAKER2 are available for download from:


NOTE: We have to correct one important reference in the BRAKER1 publication.
In computations of the gene prediction accuracy for the D. melanogaster genome we used the r6.07 version of the fly genome and annotation. However, the Supplementary materials to the paper (available at the "Bioinformatics" journal website) incorrectly cite the earlier r5.55 version of the D. melanogaster genome.

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