WebGeneMark

GeneMark Version 2.5. This page is designed specifically for mRNA/cDNA analysis. For regular GeneMark, please go here: New GeneMark. (Reload this page)

Reference:	Borodovsky M. and McIninch J. GeneMark: parallel gene recognition for both DNA strands, Computers & Chemistry, 1993, Vol. 17, No. 19, pp. 123-133.


UPDATE (June 1, 2001): Web site has been redesigned and moved a to new, more powerful server Listing of previous updates

Input Sequence
Title (optional): Sequence: Sequence File upload:
Running Options
Species: Use alternate genetic code: Eukaryote (e.g. Yeast, ATG = only start) Mycoplasma (TGA = Tryptophan)	Window size:bp Step size:bp Threshold:%
Output Options
Graphical output options Generate PDF graphics (screen) Generate PostScript graphics (email) Mark orfs on graph Mark regions on graph Mark stop codons on graph Mark start codons on graph Mark frameshifts on graph Mark putative exon splice sites Print graph in landscape format Email address (required for PostScript email output)	Text output options List open reading frames (ORFs) predicted as coding sequences (CDSs) List regions of interest List putative eukaryotic splice sites Write protein translations of ORFs Write nucleotide transcripts of ORFs Write protein translations of regions Write nucleotide transcripts of regions Write protein translations of putative exons Write nucleotide transcripts of putative exons
Run

Web pages maintained by GeneMark administrator, alexl@amber.gatech.edu.
Please send any suggestions for improvements or problems to the web page maintainer.