GeneMark Version 2.5 (Reload this page)
Reference:Borodovsky M. and McIninch J. GeneMark: parallel gene recognition for both DNA strands, Computers & Chemistry, 1993, Vol. 17, No. 19, pp. 123-133.
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UPDATE (November 8, 2005):
Prediction models ready for a total of 265 completely sequenced prokaryotic genomes in NCBI RefSeq database
Pre-calculated prediction database for these genomes
Input Sequence
Title (optional):

Sequence:

Sequence File upload:

Running Options
Species:

RBS model:

Use alternate genetic code:
Eukaryote (e.g. Yeast, ATG = only start)
Mycoplasma (TGA = Tryptophan)

Window size:bp

Step size:bp

Threshold:%

Output Options
Graphical output options
Generate PDF graphics (screen)
Generate PostScript graphics (email)
Mark orfs on graph
Mark regions on graph
Mark stop codons on graph
Mark start codons on graph
Mark frameshifts on graph
Mark putative exon splice sites
Print graph in landscape format

Email address (required for PostScript email output)

Text output options
List open reading frames (ORFs) predicted as coding sequences (CDSs)
List regions of interest
List putative eukaryotic splice sites
Write protein translations of ORFs
Write nucleotide transcripts of ORFs
Write protein translations of regions
Write nucleotide transcripts of regions
Write protein translations of putative exons
Write nucleotide transcripts of putative exons
Run
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