GeneMark.hmm for Low Eukaryotes (Version 2.4) (Reload this page)
Reference:Lukashin A. and Borodovsky M., GeneMark.hmm: new solutions for gene finding, NAR, 1998, Vol. 26, No. 4, pp. 1107-1115.
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This page has been updated to run version 2.1 of GeneMark.hmm for low eukaryotes, as well as version 2.5 of GeneMark. This version is significantly faster that the previous version and can analyze a sequence of 1 million base pairs in under 15 seconds. Support of prediction of overlapping genes has been vastly improved as well.

Please note that email is the only way to receive results for sequences longer than 5 MB.


Input Sequence
Title (optional):

Sequence Text:

Sequence File upload:

Species:

Use Kozak model, if available
 
Output Options
E-Mail Address (required for graphical output or sequences longer than 5000000 bp)


Generate PDF graphics (screen)
Generate PostScript graphics (email)
Print GeneMark 2.4 predictions in addition to GeneMark.hmm predictions
Translate predicted genes into protein
Write nucleotide transcripts

Run
Web pages maintained by GeneMark administrator, alexl@amber.gatech.edu.
Please send any suggestions for improvements or problems to the web page maintainer.