GeneMark.hmm prokaryotic

Prokaryotic GeneMark.hmm version 1
Alexander Lukashin and Mark Borodovsky
GeneMark.hmm: new solutions for gene finding.
Nucleic Acids Research (1998) 26, pp 1107-1115

Prokaryotic GeneMark.hmm version 2
John Besemer, Alexandre Lomsadze and Mark Borodovsky
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
Nucleic Acids Research (2001) 29, pp 2607-2618

This webpage provides access to gene prediction program GeneMark.hmm prokaryotic (version 3.25) and to the sets of pre-computed species specific algorithm parameters (model parameters). The list of currently supported species is available here . These parameter sets were derived by application of the GeneMarkS that carried out unsupervised training on each genome.
   Browse GeneMark.hmm prokaryotic manual
   Input sequence and Select species
Enter sequence (FASTA or multi FASTA format)
or, upload file:

Select species
Output format
for gene prediction
Output options Optional: results
by E-mail
Protein sequence
Gene nucleotide sequence

   Coding potential graph
   (not for multi FASTA)


Compress files
   Advanced options
Switch off gene start related motif(s)
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