Prokaryotic GeneMark.hmm Instructions

Prokaryotic GeneMark.hmm Instructions

Input Sequence

Output Options

Email address
Required if a graphical output is selected or if sequence is longer than 1MB.

Using Typical Model
The sequence will be analyzed using the genome specific 'typical' model. Typical models can be used concurrently with the atypical models.

Using Atypical Model
The sequence will be analyzed using the 'atypical' model representing a codon usage pattern common for a group of genomes(See Besemer & Borodovsky, link). Atypical models can be used concurrently with the typical models.

Print GeneMark 2.4 predictions in addition to GeneMark.hmm predictions
Runs GeneMark 2.4 after running GeneMark.hmm. The predictions are reported with the GeneMark.hmm predictions.