IPSSP (Protein Secondary Structure Prediction)

IPSSP (Protein Secondary Structure Prediction) (Instructions) (Reload this page)

Reference:	Aydin Z, Altunbasak Y and M. Borodovsky, Protein secondary structure prediction for a single sequence using semi-Markov HMMs, BMC Bioinformatics, 7:178-193,2006. [ Download PDF ]
1) Maximum allowed amino acid sequence length: 10,000. 2) Analyzing speed: 70 aa in 18 seconds.

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Input Sequence
Title (optional): Sequence Text: >Input Sequence 1 MKAIFVLNAQHDEAVDANSLAEAKVLANRELDKYGVSDYYKNLINNAKTVEGVKALIDEILAALP >Input Sequence 2 ALVELKVPDIGGHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEGTA Sequence File upload:
Training Dataset:
Conversion Rule:
Length Adjustments (whether length adjustments will be applied or not):


Output Options
E-Mail Address (Prediction results will be sent by email, useful for long sequences)
Run