GeneTack: tools for frameshift prediction
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GeneTack-Prok
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Model
Use pre-built model (select species):
Acinetobacter_sp_ADP1
Aeropyrum_pernix
Agrobacterium_tumefaciens_C58_Cereon_chromosome_circular
Agrobacterium_tumefaciens_C58_Cereon_chromosome_linear
Agrobacterium_tumefaciens_C58_Cereon_plasmid_AT
Agrobacterium_tumefaciens_C58_Cereon_plasmid_Ti
Agrobacterium_tumefaciens_C58_UWash_chromosome_circular
Agrobacterium_tumefaciens_C58_UWash_chromosome_linear
Agrobacterium_tumefaciens_C58_UWash_plasmid_AT
Agrobacterium_tumefaciens_C58_UWash_plasmid_Ti
Anabaena_variabilis_ATCC_29413
Anabaena_variabilis_ATCC_29413_plasmid_A
Anabaena_variabilis_ATCC_29413_plasmid_C
Anaplasma_marginale_St_Maries
Aquifex_aeolicus
Aquifex_aeolicus_plasmid_ece1
Archaeoglobus_fulgidus
Azoarcus_sp_EbN1
Azoarcus_sp_EbN1_plasmid_1
Azoarcus_sp_EbN1_plasmid_2
Bacillus_anthracis_Ames
Bacillus_anthracis_Ames_0581
Bacillus_anthracis_Ames_0581_plasmid_pXO1
Bacillus_anthracis_Ames_0581_plasmid_pXO2
Bacillus_anthracis_NC_012659
Bacillus_anthracis_str_Sterne
Bacillus_cereus_ATCC14579
Bacillus_cereus_ATCC_10987
Bacillus_cereus_ATCC_10987_plasmid_pBc10987
Bacillus_cereus_ZK
Bacillus_cereus_ZK_plasmid_pE33L466
Bacillus_cereus_ZK_plasmid_pE33L54
Bacillus_clausii_KSM-K16
Bacillus_halodurans
Bacillus_licheniformis_ATCC_14580
Bacillus_licheniformis_DSM_13
Bacillus_pumilus
Bacillus_subtilis
Bacillus_thuringiensis_konkukian
Bacillus_thuringiensis_konkukian_plasmid_97-27
Bacteroides_fragilis_NCTC_9434
Bacteroides_fragilis_NCTC_9434_plasmid_pBF9343
Bacteroides_fragilis_YCH46
Bacteroides_thetaiotaomicron_VPI-5482
Bartonella_henselae_Houston-1
Bartonella_quintana_Toulouse
Bdellovibrio_bacteriovorus
Bifidobacterium_longum
Blattabacterium_sp
Blochmannia_floridanus
Bordetella_bronchiseptica
Bordetella_parapertussis
Bordetella_pertussis
Borrelia_burgdorferi
Borrelia_burgdorferi_plasmid_cp26
Borrelia_burgdorferi_plasmid_cp32-3
Borrelia_burgdorferi_plasmid_cp32-6
Borrelia_burgdorferi_plasmid_cp32-8
Borrelia_burgdorferi_plasmid_cp32-9
Borrelia_burgdorferi_plasmid_lp28-3
Borrelia_burgdorferi_plasmid_lp28-4
Borrelia_burgdorferi_plasmid_lp54
Borrelia_garinii_PBi_chromosome_linear
Borrelia_garinii_PBi_plasmid_lp54
Bradyrhizobium_japonicum
Brucella_abortus_9-941_chromosome_I
Brucella_abortus_9-941_chromosome_II
Brucella_melitensis_chromosome_I
Brucella_melitensis_chromosome_II
Brucella_suis_1330_chromosome_I
Brucella_suis_1330_chromosome_II
Buchnera_aphidicola
Buchnera_aphidicola_Sg
Buchnera_sp
Burkholderia_mallei_ATCC_23344_chromosome_1
Burkholderia_mallei_ATCC_23344_chromosome_2
Burkholderia_pseudomallei_K96243_chromosome_1
Burkholderia_pseudomallei_K96243_chromosome_2
Campylobacter_jejuni
Campylobacter_jejuni_RM1221
Candidatus_Blochmannia_pennsylvanicus_BPEN
Candidatus_Pelagibacter_ubique_HTCC1062
Caulobacter_crescentus
Chlamydia_muridarum
Chlamydia_trachomatis
Chlamydia_trachomatis_A_HAR-13
Chlamydophila_abortus_S26_3
Chlamydophila_caviae
Chlamydophila_pneumoniae_AR39
Chlamydophila_pneumoniae_CWL029
Chlamydophila_pneumoniae_J138
Chlamydophila_pneumoniae_TW_183
Chlorobium_tepidum_TLS
Chromobacterium_violaceum
Clostridium_acetobutylicum
Clostridium_acetobutylicum_plasmid_pSOL1
Clostridium_perfringens
Clostridium_perfringens_plasmid_pCP13
Clostridium_tetani_E88
Clostridium_tetani_E88_plasmid_pE88
Colwellia_psychrerythraea_34H
Corynebacterium_diphtheriae
Corynebacterium_efficiens_YS-314
Corynebacterium_glutamicum_ATCC_13032_Bielefeld
Corynebacterium_glutamicum_ATCC_13032_Kitasato
Corynebacterium_jeikeium_K411
Coxiella_burnetii
Coxiella_burnetii_plasmid_pQpH1
Dechloromonas_aromatica_RCB
Dehalococcoides_CBDB1
Dehalococcoides_ethenogenes_195
Deinococcus_radiodurans_chromosome_1
Deinococcus_radiodurans_chromosome_2
Deinococcus_radiodurans_plasmid_CP1
Deinococcus_radiodurans_plasmid_MP1
Desulfotalea_psychrophila_LSv54
Desulfotalea_psychrophila_LSv54_plasmid_large
Desulfovibrio_vulgaris_Hildenborough
Desulfovibrio_vulgaris_Hildenborough_plasmid_megaplasmid
Ehrlichia_canis_Jake
Ehrlichia_ruminantium_Gardel
Ehrlichia_ruminantium_str._Welgevonden
Ehrlichia_ruminantium_Welgevonden
Enterococcus_faecalis_V583
Enterococcus_faecalis_V583_plasmid_pTEF1
Enterococcus_faecalis_V583_plasmid_pTEF2
Enterococcus_faecalis_V583_plasmid_pTEF3
Erwinia_carotovora_atroseptica_SCRI1043
Escherichia_coli_CFT073
Escherichia_coli_K12
Escherichia_coli_O157H7
Escherichia_coli_O157H7_EDL933
Escherichia_coli_O157H7_plasmid_pO157
Francisella_tularensis_tularensis
Fusobacterium_nucleatum
Geobacillus_kaustophilus_HTA426
Geobacter_sulfurreducens
Gloeobacter_violaceus
Gluconobacter_oxydans_621H
Gluconobacter_oxydans_621H_plasmid_pGOX1
Gluconobacter_oxydans_621H_plasmid_pGOX2
Gluconobacter_oxydans_621H_plasmid_pGOX3
Haemophilus_ducreyi_35000HP
Haemophilus_influenzae
Haemophilus_influenzae_86_028NP
Haloarcula_marismortui_ATCC_43049_chromosome_I
Haloarcula_marismortui_ATCC_43049_chromosome_II
Haloarcula_marismortui_ATCC_43049_plasmid_pNG500
Haloarcula_marismortui_ATCC_43049_plasmid_pNG600
Haloarcula_marismortui_ATCC_43049_plasmid_pNG700
Halobacterium_sp
Halobacterium_sp_plasmid_pNRC100
Halobacterium_sp_plasmid_pNRC200
Helicobacter_hepaticus
Helicobacter_pylori_26695
Helicobacter_pylori_J99
Idiomarina_loihiensis_L2TR
Lactobacillus_acidophilus_NCFM
Lactobacillus_johnsonii_NCC_533
Lactobacillus_plantarum
Lactobacillus_plantarum_plasmid_pWCFS103
Lactococcus_lactis
Legionella_pneumophila_Lens
Legionella_pneumophila_Lens_plasmid_pLPL
Legionella_pneumophila_Paris
Legionella_pneumophila_Paris_plasmid_pLPP
Legionella_pneumophila_Philadelphia_1
Leifsonia_xyli_xyli_CTCB0
Leptospira_interrogans_serovar_Copenhageni_chromosome_I
Leptospira_interrogans_serovar_Copenhageni_chromosome_II
Leptospira_interrogans_serovar_Lai_chromosome_I
Leptospira_interrogans_serovar_Lai_chromosome_II
Listeria_innocua
Listeria_monocytogenes
Listeria_monocytogenes_4b_F2365
Mannheimia_succiniciproducens_MBEL55E
Mesoplasma_florum_L1
Mesorhizobium_loti
Mesorhizobium_loti_plasmid_pMLa
Mesorhizobium_loti_plasmid_pMLb
Methanobacterium_thermoautotrophicum
Methanococcoides_burtonii6242
Methanococcus_jannaschii
Methanococcus_jannaschii_chromosome_extra-chr1
Methanopyrus_kandleri
Methanosarcina_acetivorans
Methanosarcina_barkeri_fusaro_chromosome_1
Methanosarcina_barkeri_fusaro_plasmid_1
Methanosarcina_mazei
Methylococcus_capsulatus_Bath
Mycobacterium_avium_paratuberculosis
Mycobacterium_bovis
Mycobacterium_leprae
Mycobacterium_smegmatis
Mycobacterium_tuberculosis_CDC1551
Mycobacterium_tuberculosis_H37Rv
Mycoplasma_gallisepticum
Mycoplasma_genitalium
Mycoplasma_hyopneumoniae_232
Mycoplasma_hyopneumoniae_7448
Mycoplasma_hyopneumoniae_J
Mycoplasma_mobile_163K
Mycoplasma_mycoides
Mycoplasma_penetrans
Mycoplasma_pneumoniae
Mycoplasma_pulmonis
Mycoplasma_synoviae_53
Nanoarchaeum_equitans
Natronomonas_pharaonis
Natronomonas_pharaonis_plasmid_PL131
Neisseria_gonorrhoeae_FA_1090
Neisseria_meningitidis_MC58
Neisseria_meningitidis_Z2491
Nitrobacter_winogradskyi_Nb-255
Nitrosococcus_oceani_ATCC_19707
Nitrosococcus_oceani_ATCC_19707_plasmid_A
Nitrosomonas_europaea
Nocardia_farcinica_IFM10152
Nocardia_farcinica_IFM10152_plasmid_pNF1
Nocardia_farcinica_IFM10152_plasmid_pNF2
Nostoc_sp
Nostoc_sp_plasmid_pCC7120alpha
Nostoc_sp_plasmid_pCC7120beta
Nostoc_sp_plasmid_pCC7120gamma
Oceanobacillus_iheyensis
Onion_yellows_phytoplasma
Parachlamydia_sp_UWE25
Pasteurella_multocida
Photobacterium_profundum_SS9_chromosome_1
Photobacterium_profundum_SS9_chromosome_2
Photorhabdus_luminescens
Picrophilus_torridus_DSM_9790
Pirellula_sp
Polaromonas_sp_JS666
Porphyromonas_gingivalis_W83
Prochlorococcus_marinus_CCMP1375
Prochlorococcus_marinus_MED4
Prochlorococcus_marinus_MIT9313
Prochlorococcus_marinus_NATL2A
Propionibacterium_acnes_KPA171202
Pseudoalteromonas_haloplanktis_TAC125_chromosome_I
Pseudoalteromonas_haloplanktis_TAC125_chromosome_II
Pseudomonas_aeruginosa
Pseudomonas_fluorescens_Pf-5
Pseudomonas_fluorescens_PfO-1
Pseudomonas_putida_KT2440
Pseudomonas_syringae
Pseudomonas_syringae_phaseolicola_1448A
Pseudomonas_syringae_phaseolicola_1448A_plasmid_large
Pseudomonas_syringae_phaseolicola_1448A_plasmid_small
Pseudomonas_syringae_plasmid_pDC3000A
Pseudomonas_syringae_plasmid_pDC3000B
Pseudomonas_syringae_pv_B728a
Psychrobacter_arcticum_273-4
Pyrobaculum_aerophilum
Pyrococcus_abyssi
Pyrococcus_furiosus
Pyrococcus_horikoshii
Ralstonia_eutropha_JMP134_chromosome_1
Ralstonia_eutropha_JMP134_chromosome_2
Ralstonia_eutropha_JMP134_plasmid_
Ralstonia_eutropha_JMP134_plasmid_1
Ralstonia_solanacearum
Ralstonia_solanacearum_plasmid_pGMI1000MP
Rhodobacter_sphaeroides_2_4_1_chromosome_1
Rhodobacter_sphaeroides_2_4_1_chromosome_2
Rhodobacter_sphaeroides_2_4_1_plasmid_B
Rhodobacter_sphaeroides_2_4_1_plasmid_C
Rhodobacter_sphaeroides_2_4_1_plasmid_D
Rhodopseudomonas_palustris_CGA009
Rickettsia_conorii
Rickettsia_felis_URRWXCal2
Rickettsia_felis_URRWXCal2_plasmid_pRF
Rickettsia_felis_URRWXCal2_plasmid_pRFdelta
Rickettsia_prowazekii
Rickettsia_typhi_wilmington
Salmonella_enterica_Choleraesuis
Salmonella_enterica_Choleraesuis_plasmid_pSC138
Salmonella_enterica_Paratypi_ATCC_9150
Salmonella_typhi
Salmonella_typhi_plasmid_pHCM1
Salmonella_typhi_plasmid_pHCM2
Salmonella_typhi_Ty2
Salmonella_typhimurium_LT2
Salmonella_typhimurium_LT2_plasmid_pSLT
Shewanella_oneidensis
Shewanella_oneidensis_plasmid_pMR-1
Shigella_flexneri_2a
Shigella_flexneri_2a_2457T
Shigella_flexneri_2a_plasmid_pCP301
Shigella_sonnei_Ss046
Shigella_sonnei_Ss046_plasmid_pSS
Silicibacter_pomeroyi_DSS-3
Silicibacter_pomeroyi_DSS-3_plasmid_
Sinorhizobium_meliloti
Sinorhizobium_meliloti_plasmid_pSymA
Sinorhizobium_meliloti_plasmid_pSymB
Staphylococcus_aureus_aureus_MRSA252
Staphylococcus_aureus_aureus_MSSA476
Staphylococcus_aureus_aureus_MSSA476_plasmid_pSAS
Staphylococcus_aureus_COL
Staphylococcus_aureus_Mu50
Staphylococcus_aureus_Mu50_plasmid_VRSAp
Staphylococcus_aureus_MW2
Staphylococcus_aureus_N315
Staphylococcus_aureus_N315_plasmid_pN315
Staphylococcus_epidermidis_ATCC_12228
Staphylococcus_epidermidis_ATCC_12228_plasmid_pSE-12228-05
Staphylococcus_epidermidis_RP62A
Staphylococcus_haemolyticus
Staphylococcus_saprophyticus
Staphylococcus_saprophyticus_plasmid_pSSP1
Staphylococcus_saprophyticus_plasmid_pSSP2
Streptococcus_agalactiae_2603
Streptococcus_agalactiae_A909
Streptococcus_agalactiae_NEM316
Streptococcus_mutans
Streptococcus_pneumoniae_R6
Streptococcus_pneumoniae_TIGR4
Streptococcus_pyogenes_M1_GAS
Streptococcus_pyogenes_MGAS10394
Streptococcus_pyogenes_MGAS315
Streptococcus_pyogenes_MGAS5005
Streptococcus_pyogenes_MGAS6180
Streptococcus_pyogenes_MGAS8232
Streptococcus_pyogenes_SSI-1
Streptococcus_thermophilus_CNRZ1066
Streptococcus_thermophilus_LMG_18311
Streptomyces_avermitilis
Streptomyces_avermitilis_plasmid_SAP1
Streptomyces_coelicolor
Streptomyces_coelicolor_plasmid_SCP1
Streptomyces_coelicolor_plasmid_SCP2
Sulfolobus_acidocaldarius_DSM_639
Sulfolobus_solfataricus
Sulfolobus_tokodaii
Symbiobacterium_thermophilum_IAM14863
Synechococcus_elongatus_PCC_6301
Synechococcus_sp_WH8102
Synechocystis_PCC6803
Synechocystis_PCC6803_plasmid_pSYSA
Synechocystis_PCC6803_plasmid_pSYSG
Synechocystis_PCC6803_plasmid_pSYSM
Synechocystis_PCC6803_plasmid_pSYSX
Thermoanaerobacter_tengcongensis
Thermobifida_fusca_YX
Thermococcus_kodakaraensis_KOD1
Thermoplasma_acidophilum
Thermoplasma_volcanium
Thermosynechococcus_elongatus
Thermotoga_maritima
Thermus_thermophilus_HB27
Thermus_thermophilus_HB27_plasmid_pTT27
Thermus_thermophilus_HB8
Thermus_thermophilus_HB8_plasmid_pTT27
Thiobacillus_denitrificans_ATCC_25259
Treponema_denticola_ATCC_35405
Treponema_pallidum
Tropheryma_whipplei_TW08_27
Tropheryma_whipplei_Twist
Ureaplasma_urealyticum
Vibrio_cholerae_chromosome_I
Vibrio_cholerae_chromosome_II
Vibrio_fischeri_ES114_chromosome_I
Vibrio_fischeri_ES114_chromosome_II
Vibrio_fischeri_ES114_plasmid_pES100
Vibrio_parahaemolyticus_chromosome_I
Vibrio_parahaemolyticus_chromosome_II
Vibrio_vulnificus_CMCP6_chromosome_I
Vibrio_vulnificus_CMCP6_chromosome_II
Vibrio_vulnificus_YJ016_chromosome_I
Vibrio_vulnificus_YJ016_chromosome_II
Vibrio_vulnificus_YJ016_plasmid_pYJ016
Wigglesworthia_brevipalpis
Wolbachia_endosymbiont_of_Brugia_malayi_TRS
Wolbachia_endosymbiont_of_Drosophila_melanogaster
Wolinella_succinogenes
Xanthomonas_campestris
Xanthomonas_campestris_8004
Xanthomonas_citri
Xanthomonas_citri_plasmid_pXAC33
Xanthomonas_oryzae_KACC10331
Xylella_fastidiosa
Xylella_fastidiosa_Temecula1
Yersinia_pestis_biovar_Mediaevails
Yersinia_pestis_biovar_Mediaevails_plasmid_pCD1
Yersinia_pestis_CO92
Yersinia_pestis_CO92_plasmid_pCD1
Yersinia_pestis_CO92_plasmid_pMT1
Yersinia_pestis_KIM
Yersinia_pestis_KIM_plasmid_pMT-1
Yersinia_pseudotuberculosis_IP32953
Yersinia_pseudotuberculosis_IP32953_plasmid_pYptb32953
Yersinia_pseudotuberculosis_IP32953_plasmid_pYV
Zymomonas_mobilis_ZM4
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