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Selected peer-reviewed journal publications
- Mitrophanov1, A. Y., Jewett1, M. W., Hadley, T. J., Groisman, E. A. (2008) Evolution and dynamics of regulatory architectures controlling polymyxin B resistance in enteric bacteria. PLoS Genet. 4: e1000233
[Link to PLoS Genet. website]
1Equal authorship.
- Mitrophanov, A. Y. and Groisman, E. A. (2008) Signal integration in bacterial two-component regulatory systems. Genes Dev. 22 2601–2611.
[Link to Genes Dev. website]
- Mitrophanov, A. Y. and Groisman, E. A. (2008) Positive feedback in cellular control systems. Bioessays 30: 542–555.
[PDF]
- Kato1, A., Mitrophanov1, A. Y., Groisman, E. A. (2007) A connector of two-component regulatory systems promotes signal amplification and persistence of expression. Proc. Natl. Acad. Sci. USA 104: 12063–12068.
[Link to PNAS website]
1Equal authorship.
- Mitrophanov, A. Y. and Borodovsky, M. (2007) Convergence of the TKF91 model and biological sequence length evolution. Math. Biosci. 209: 470–485.
[PDF]
- Mitrophanov, A. Y., Churchward, G. and Borodovsky, M. (2007) Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system. J. Theor. Biol. 246: 113–128.
[PDF]
[Supporting Information]
- Mitrophanov, A. Yu. and Borodovsky, M. (2006) Statistical significance
in biological sequence analysis. Brief. Bioinform. 7: 2–24 [PDF]
- Mitrophanov, A. Yu. (2006) Estimates of sensitivity to perturbations
for finite homogeneous continuous-time Markov chains. Theory Probab. Appl. 50: 319–326. [PDF]
- Mitrophanov, A. Yu. (2005) Sensitivity and convergence of uniformly ergodic Markov chains. J. Appl. Probab. 42: 1003–1014.
[PDF]
- Mitrophanov, A. Yu., Lomsadze, A. and Borodovsky, M. (2005) Sensitivity of hidden Markov models. J. Appl. Probab. 42: 632–642.
[PDF]
- Mitrophanov, A. Yu. (2005) Ergodicity coefficient and perturbation bounds
for continuous–time Markov chains.
Math. Inequal. Appl. 8: 159–168.
[PDF]
- Mitrophanov, A. Yu. (2004) The spectral gap and perturbation bounds for
reversible continuous-time Markov chains.
J. Appl. Probab. 41: 1219–1222.
[PDF]
- Mitrophanov, A. Yu. (2004) Reversible Markov chains and spanning trees.
Math. Scientist 29: 107–114.
[PDF]
- Mitrophanov, A. Yu. (2004) Note on Zeifman’s bounds on the rate
of convergence for birth–death processes.
J. Appl. Probab. 41: 593–596.
[PDF]
- Mitrophanov, A. Yu. (2003) Stability and exponential convergence
of continuous-time Markov chains. J. Appl. Probab. 40:
970–979.
[PDF]
- Evseeva, N. V., Tkachenko, O. V., Lobachev, Yu. V.,
Mitrophanov, A. Yu.,
Djatchouk, T. I., and Shchyogolev, S. Yu. (2002) Studies on the embryogenic processes in the in vitro culture
of wheat somatic tissues
by using a proliferative antigen of initial cells.
Wheat Information Service 94: 1–4.
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- Mitrophanov, A. Yu. (2001) Stochastic Markov models for the process
of binary complex formation and dissociation. Mat. Model. 13 (9): 101–109.
[English version in PDF]
[Russian version in PDF]