Selected peer-reviewed journal publications

• Mitrophanov¹, A. Y., Jewett¹, M. W., Hadley, T. J., Groisman, E. A. (2008) Evolution and dynamics of regulatory architectures controlling polymyxin B resistance in enteric bacteria. PLoS Genet. 4: e1000233 [Link to PLoS Genet. website]
  ¹Equal authorship.
• Mitrophanov, A. Y. and Groisman, E. A. (2008) Signal integration in bacterial two-component regulatory systems. Genes Dev. 22 2601–2611. [Link to Genes Dev. website]
• Mitrophanov, A. Y. and Groisman, E. A. (2008) Positive feedback in cellular control systems. Bioessays 30: 542–555. [PDF]
• Kato¹, A., Mitrophanov¹, A. Y., Groisman, E. A. (2007) A connector of two-component regulatory systems promotes signal amplification and persistence of expression. Proc. Natl. Acad. Sci. USA 104: 12063–12068. [Link to PNAS website]
  ¹Equal authorship.
• Mitrophanov, A. Y. and Borodovsky, M. (2007) Convergence of the TKF91 model and biological sequence length evolution. Math. Biosci. 209: 470–485. [PDF]
• Mitrophanov, A. Y., Churchward, G. and Borodovsky, M. (2007) Control of Streptococcus pyogenes virulence: modeling of the CovR/S signal transduction system. J. Theor. Biol. 246: 113–128. [PDF] [Supporting Information]
• Mitrophanov, A. Yu. and Borodovsky, M. (2006) Statistical significance in biological sequence analysis. Brief. Bioinform. 7: 2–24 [PDF]
• Mitrophanov, A. Yu. (2006) Estimates of sensitivity to perturbations for finite homogeneous continuous-time Markov chains. Theory Probab. Appl. 50: 319–326. [PDF]
• Mitrophanov, A. Yu. (2005) Sensitivity and convergence of uniformly ergodic Markov chains. J. Appl. Probab. 42: 1003–1014. [PDF]
• Mitrophanov, A. Yu., Lomsadze, A. and Borodovsky, M. (2005) Sensitivity of hidden Markov models. J. Appl. Probab. 42: 632–642. [PDF]
• Mitrophanov, A. Yu. (2005) Ergodicity coefficient and perturbation bounds for continuous–time Markov chains. Math. Inequal. Appl. 8: 159–168. [PDF]
• Mitrophanov, A. Yu. (2004) The spectral gap and perturbation bounds for reversible continuous-time Markov chains. J. Appl. Probab. 41: 1219–1222. [PDF]
• Mitrophanov, A. Yu. (2004) Reversible Markov chains and spanning trees. Math. Scientist 29: 107–114. [PDF]
• Mitrophanov, A. Yu. (2004) Note on Zeifman’s bounds on the rate of convergence for birth–death processes. J. Appl. Probab. 41: 593–596. [PDF]
• Mitrophanov, A. Yu. (2003) Stability and exponential convergence of continuous-time Markov chains. J. Appl. Probab. 40: 970–979. [PDF]
• Evseeva, N. V., Tkachenko, O. V., Lobachev, Yu. V., Mitrophanov, A. Yu., Djatchouk, T. I., and Shchyogolev, S. Yu. (2002) Studies on the embryogenic processes in the in vitro culture of wheat somatic tissues by using a proliferative antigen of initial cells. Wheat Information Service 94:  1–4. [HTML]
• Mitrophanov, A. Yu. (2001) Stochastic Markov models for the process of binary complex formation and dissociation. Mat. Model. 13 (9): 101–109. [English version in PDF] [Russian version in PDF]